Dense sampling of bird diversity increases power of comparative genomics

Nature ( the world’s leading multidisciplinary science journal) published an article  in which they announced a substantial step towards the dense representation of avian phylogenetic and molecular diversity, by analysing 363 genomes from 92.4% of bird families—including 267 newly sequenced genomes produced for phase II of the Bird 10,000 Genomes (B10K) Project [1]. This research also included the results of our Agapornis Genome Study [2][3].

This genomic resource will offer new perspectives on evolutionary processes in cross-species comparative analyses and assist in efforts to conserve species. In other words, this research should provide more insight into the evolution and development of the various bird species.

literature:

[1] S. Feng e.a., ‘Dense sampling of bird diversity increases power of comparative genomics’, Nature, vol. 587, nr. 7833, Art. nr. 7833, nov. 2020, doi: 10.1038/s41586-020-2873-9.
[2] H. van der Zwan, C. Visser, M. Schoonen, en R. van der Sluis, ‘SNP discovery by resequencing the Agapornis roseicollis (Peach-faced lovebird) genome using Genome Analysis Toolkit’, 2019.
[3 ] H. Van der Zwan, ‘De novo sequencing, assembly and annotation of the Agapornis roseicollis genome to identify variants for the development of genetic screening tests’, Thesis, North-West University (South Africa). Potchefstroom Campus, 2019.

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2 comments

  1. Hello Sir,

    Henriette van der zwan in the study of genome she uses roseicollis longfeather green as a reference.
    In your opinon can use longfeather green was it the rigth choice?

    1. Paulo,
      I believe that, as a geneticist and Master in Science, Doctor van der Zwan knows what to do and I am sure that she makes the right decisions. Besides, if you also read “Development of an SNP-based parentage verification panel for lovebirds”, you will notice that we not only scanned the genome of a longfeathered A. roseicollis, but we also genotyped different SNPs in a population of 960 lovebirds across seven species. For your info – as in each research project – they pick one specimen to start with. Preferably one bird from which they also could scan the genome of the parents and grandparents. Just like this bird.
      PS: please, next time use your own name (and your hotmail address) and not an alias.

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